Bleed The Freak
Superstar
I like this idea. They could have a Hydra faction that existed and operated post-WWII. Reveal that Hydra ran concentration camps around the world that killed many innocent people, including Magneto's family. Have Magneto meet Charles in the 90s, and the rest will be history.
For the MCU X-men treatment, I would make mutations a rare and semi-recent phenomenon. Have them be an extreme minority with only a handful in existence initially. In the beginning, Xavier and Magneto should be only ones who know the truth about the X-gene. The writers could show that Professor X has been using his telepathic powers to wipe people's memories and hide the truth about his school (and about mutants as a whole) from the world because he thought they weren't ready to handle it.
However, some past traumatic event involving one of the infinity stones can rear it's ugly head. Maybe some kind of radiation explosion involving one of the gems can mark the birth the X-gene (the initial radiation victims would remain human, but their unborn future kids would be affected). What could happen is that the mutants who were born right after that incident will eventually get old enough to have powers, making it impossible for Charles to telepathically hide everything. This would force him to go public with the X-men and the school.
They could explain that the original 5 X-men have been training in the mansion ever since the beginning of Phase 2, but didn't get involved in any fighting because they weren't ready for the field yet (and because of Xavier's powers). Logan, Storm, Nightcrawler, Colossus, and the others have always existed, but don't know the origins of their powers. They won't find out that they're mutants (or even know what a mutant is) until they eventually meet Charles.
Exactly. It would be a quick fix to a brutal problem. Quick and modern. You could then show later on dudes like Logan were rare and simply wanted to be left alone ( hence why he wasn't around in Infinity War etc). Or all the chaos of Infinity War allowed him to break out of the Weapon X program. Maybe show his cell/chamber cracking with explosions taking place.
Plus you do the Iron Man treatment and not get caught up in an era that doesn't feel out of place to the audience.
You could then show Magento slowly working up the resentment during the registration act in Civil War (maybe show a clip of him seeing the requests on TV and it's just his helmet and he pounds his hand).
Then like you said....the infinity stones create the mutants/activate the recessive gene.
Dudes like Apocalypse and Sinister would be a challenge though for sure.
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