Suikoden 3 (not 2)
Xenogears
Valkyrie Profile
Fire Emblem 7
Xenosaga 3
Note: Alot of people like Suikoden 2 (solid game) but never gave 3 a chance. The trinity sight system adds dimensionality to the story, thereby making the world more engrossing. You feel like you're living in the game's world and get to know the characters more intimately. There's also little experimental features like the lottery, a trading system (purchase fish from a port town and sell it in another town for profit), the skill system, the rune system, secret chapters, replayability (choosing a different flame champion each play-through). It's criminal that this game doesn't get the recognition it deserves and is often overshadowed by its PS1 predecessors.