I honestly think the Architect decided to keep Neo alive because he's already faced multiple previous "Ones" before him. So instead of dealing with the rise of a new "One", after Neo rebooted the Matrix, they just reinserted him and imprison him mentally. Also the name of the movie is "Resurrections". I think the Wick look is also a Jesus look which is what Neo symbolizes in the Matrix. He was like a religious figure. In "Reloaded" the people in Zion was praying to Neo. Then in "Revolutions" the whole cross in the light symbolism. I mean there's a reason they releasing it on Christmas too to tie into that religious theme. But yes this is clearly a different version of the Matrix where as the Trilogy was the same version.